Studies on the flight medical aspects of the German Lufthansa non-stop route from Frankfurt to Rio de Janeiro, part 1

The problem of crew size for regularly scheduled flights between Frankfurt and Rio de Janeiro is discussed. Factors affecting crew performance are examined, comparisons are drawn to regulations of other countries and crew questionnaires and tests are presented

Is it Possible to Change the Way College Students Think About Stress? The Benefits of a Stress Management Course

The purpose of this study was to analyze the effects of a stress management course on college students’ stress mindsets. Stress mindset encompasses the beliefs one holds about stress. Those who view stress as beneficial have a stress-is-enhancing mindset, while those who view stress as detrimental have a stress-is-debilitating mindset. Subjects enrolled in a physical activity course (control group, n=25) and a stress management course (n=24) possessed a neutral stress mindset at baseline. Students in the intervention group showed a significant shift to a more stress-is-enhancing mindset by the end of the semester. Students in the control group did not show any significant changes in stress mindset over the course of the semester. Additionally, we analyzed the relationships between personality traits and baseline stress mindset and found significant correlations. However, no relationships existed when personality and changes in stress mindset were analyzed.https://orb.binghamton.edu/research_days_posters/1007/thumbnail.jp

The pan-genome of Lactobacillus reuteri strains originating from the pig gastrointestinal tract

Background Lactobacillus reuteri is a gut symbiont of a wide variety of vertebrate species that has diversified into distinct phylogenetic clades which are to a large degree host-specific. Previous work demonstrated host specificity in mice and begun to determine the mechanisms by which gut colonisation and host restriction is achieved. However, how L. reuteri strains colonise the gastrointestinal (GI) tract of pigs is unknown. Results To gain insight into the ecology of L. reuteri in the pig gut, the genome sequence of the porcine small intestinal isolate L. reuteri ATCC 53608 was completed and consisted of a chromosome of 1.94 Mbp and two plasmids of 138.5 kbp and 9.09 kbp, respectively. Furthermore, we generated draft genomes of four additional L. reuteri strains isolated from pig faeces or lower GI tract, lp167-67, pg-3b, 20-2 and 3c6, and subjected all five genomes to a comparative genomic analysis together with the previously completed genome of strain I5007. A phylogenetic analysis based on whole genomes showed that porcine L. reuteri strains fall into two distinct clades, as previously suggested by multi-locus sequence analysis. These six pig L. reuteri genomes contained a core set of 1364 orthologous gene clusters, as determined by OrthoMCL analysis, that contributed to a pan-genome totalling 3373 gene clusters. Genome comparisons of the six pig L. reuteri strains with 14 L. reuteri strains from other host origins gave a total pan-genome of 5225 gene clusters that included a core genome of 851 gene clusters but revealed that there were no pig-specific genes per se. However, genes specific for and conserved among strains of the two pig phylogenetic lineages were detected, some of which encoded cell surface proteins that could contribute to the diversification of the two lineages and their observed host specificity. Conclusions This study extends the phylogenetic analysis of L. reuteri strains at a genome-wide level, pointing to distinct evolutionary trajectories of porcine L. reuteri lineages, and providing new insights into the genomic events in L. reuteri that occurred during specialisation to their hosts. The occurrence of two distinct pig-derived clades may reflect differences in host genotype, environmental factors such as dietary components or to evolution from ancestral strains of human and rodent origin following contact with pig populations

Normalisation against circadian and age-related disturbances enables robust detection of gene expression changes in liver of aged mice

The expression of some genes is affected by age. To detect such age-related changes, their expression levels are related to constant marker genes. However, transcriptional noise increasing with advancing age renders difficult the identification of real age-related changes because it may affect the marker genes as well. Here, we report a selection procedure for genes appropriate to normalise the mouse liver transcriptome under various conditions including age. These genes were chosen from an initial set of 16 candidate genes defined based on a RNA-sequencing experiment and published literature. A subset of genes was selected based on rigorous statistical assessment of their variability using both RNA-sequencing and Nanostring hybridization experiments. The robustness of these marker genes was then verified by the analysis of 130 publicly available data sets using the mouse liver transcriptome. Altogether, a set of three genes, Atp5h, Gsk3β, and Sirt2 fulfilled our strict selection criteria in all assessments, while four more genes, Nono, Tprkb, Tspo, and Ttr passed all but one assessment and were included into the final set of marker genes to enhance robustness of normalisation against outliers. Using the geometric mean of expression of the genes to normalise Nanostring hybridization experiments we reliably identified age-related increases in the expression of Casein kinase 1δ and 1ϵ, and Sfpq, while the expression of the glucose transporter Glut2 decreased. The age- related changes were verified by real-time PCR and Western blot analysis. As conclusion, proper normalisation enhances the robustness of quantitative methods addressing age-related changes of a transcriptome

No detection of brodifacoum residues in the marine and terrestrial food web three years after rat eradication at Palmyra Atoll, Central Pacific

Invasive alien species represent one of the greatest threats to native plants and animals on islands. Rats (Rattus spp.) have invaded most of the world’s oceanic islands, causing lasting or irreversible damage to ecosystems and biodiversity. To counter this threat, techniques to eradicate invasive rats from islands have been developed and applied across the globe. Eradication of alien rats from large or complex island ecosystems has only been successful with the use of bait containing a rodenticide. While effective at eradicating rats from islands, rodenticide can persist in the ecosystem longer than the time required to eradicate the target rat population and can potentially harm non-target species. However, the persistence of rodenticides in ecosystems following rat eradication campaigns is poorly understood, though predictions can be made based on the chemical properties of the rodenticide and the environment it is applied in. Brodifacoum, a relatively persistent second-generation anticoagulant, was used to successfully eradicate rats from Palmyra Atoll. With this study, we evaluated the persistence of brodifacoum residues in terrestrial and marine species at Palmyra Atoll (Northern Line Islands) three years after rat eradication. We collected 44 pooled samples containing 121 individuals of the following: mullet (Moolgarda engeli), cockroaches (Periplaneta sp.), geckos (Lepidodactylus lugubris), hermit crabs (Coenobita perlatus), and fiddler crabs (Uca tetragonon). Despite detection of brodifacoum residue in all five of the species sampled in this study 60 days after the application of bait to Palmyra Atoll in 2011, brodifacoum residue was not found in any of the pooled samples collected three years after bait application. Our study demonstrates how brodifacoum residues are unlikely to persist in the marine and terrestrial food web, in a wet tropical environment, three years after rat eradication

Refinement Propagation. Towards Automated Construction of Visual Specifications.

Creation and transformation of visual specifications is driven by modeler’s design decisions. After a design decision has been made, the modeler needs to adjust the specification to maintain its correctness. The number of adjustments might make the design process tedious for large specifications. We are interested in techniques that will reduce the modeler’s obligation to control specification correctness. Every single transformation of the visual specification can be captured by the notion of refinement used in formal methods. In this work we present the technique that supports a stepwise refinement of visual specifications based on calculations. We use refinement calculus as a logic for reasoning about refinement correctness. When a design decision is made by the modeler, the necessary adjustments are calculated based on rules of refinement propagation. Refinement propagation can automate the specification adjustment and enforce its correctness

A Method of Functional Alignment Verification in Hierarchical Enterprise Models

Enterprise modeling involves multiple domains of expertise: requirements engineering, business process modeling, IT development etc. Our experience has shown that hierarchical enterprise models, made of an assembly of system models, are effective. In these models, two hierarchies exist: an organizational level hierarchy (describing systems' construction) and a functional level hierarchy (describing systems' functionality). Using a uniform hierarchical modeling language, system models at different hierarchical levels can be aligned in the context of the enterprise model. Using an operational semantics, each system model can be translated into executable code for model simulation and testing. The possibility to simulate and test models leads to the alignment verification for all system models across both hierarchies. In this paper we propose a method and tool for functional alignment verification. We use the Abstract State Machine (ASM) and the ASM language (AsmL) to formalize our graphical models for simulation and testing. We illustrate this approach with an example

Simultaneous Swift X-ray and UV views of comet C/2007 N3 (Lulin)

We present an analysis of simultaneous X-Ray and UV observations ofcomet C/2007 N3 (Lulin) taken on three days between January 2009 and March 2009 using the Swift observatory. For our X-ray observations, we used basic transforms to account for the movement of the comet to allow the combination of all available data to produce an exposure-corrected image. We fit a simple model to the extracted spectrum and measured an X-ray flux of 4.3+/-1.3 * 10^-13 ergs cm-2 s-1 in the 0.3 to 1.0 keV band. In the UV, we acquired large-aperture photometry and used a coma model to derive water production rates given assumptions regarding the distribution of water and its dissociation into OH molecules about the comet's nucleus. We compare and discuss the X-ray and UV morphology of the comet. We show that the peak of the cometary X-ray emission is offset sunward of the UV peak emission, assumed to be the nucleus, by approximately 35,000 km. The offset observed, the shape of X-ray emission and the decrease of the X-ray emission comet-side of the peak, suggested that the comet was indeed collisionally thick to charge exchange, as expected from our measurements of the comet's water production rate (6--8 10^28 mol. s-1). The X-ray spectrum is consistent with solar wind charge exchange emission, and the comet most likely interacted with a solar wind depleted of very highly ionised oxygen. We show that the measured X-ray lightcurve can be very well explained by variations in the comet's gas production rates, the observing geometry and variations in the solar wind flux.Comment: Paper accepted for publication in Astronomy and Astrophysics, 6 March 2012, 12 pages, 8 colour figures, one tabl

Spectral Analysis of the Chandra Comet Survey

We present results of the analysis of cometary X-ray spectra with an extended version of our charge exchange emission model (Bodewits et al. 2006). We have applied this model to the sample of 8 comets thus far observed with the Chandra X-ray observatory and ACIS spectrometer in the 300-1000 eV range. The surveyed comets are C/1999 S4 (LINEAR), C/1999 T1 (McNaught-Hartley), C/2000 WM1 (LINEAR), 153P/2002 (Ikeya-Zhang), 2P/2003 (Encke), C/2001 Q4 (NEAT), 9P/2005 (Tempel 1) and 73P/2006-B (Schwassmann-Wachmann 3) and the observations include a broad variety of comets, solar wind environments and observational conditions. The interaction model is based on state selective, velocity dependent charge exchange cross sections and is used to explore how cometary X-ray emission depend on cometary, observational and solar wind characteristics. It is further demonstrated that cometary X-ray spectra mainly reflect the state of the local solar wind. The current sample of Chandra observations was fit using the constrains of the charge exchange model, and relative solar wind abundances were derived from the X-ray spectra. Our analysis showed that spectral differences can be ascribed to different solar wind states, as such identifying comets interacting with (I) fast, cold wind, (II), slow, warm wind and (III) disturbed, fast, hot winds associated with interplanetary coronal mass ejections. We furthermore predict the existence of a fourth spectral class, associated with the cool, fast high latitude wind.Comment: 16 pages, 16 figures, and 7 Tables; accepted A&A (Due to space limits, this version has lower resolution jpeg images.

Trophic niche shifts and phenotypic trait evolution are largely decoupled in Australasian parrots

Background: Trophic shifts from one dietary niche to another have played major roles in reshaping the evolutionary trajectories of a wide range of vertebrate groups, yet their consequences for morphological disparity and species diversity differ among groups. Methods: Here, we use phylogenetic comparative methods to examine whether the evolution of nectarivory and other trophic shifts have driven predictable evolutionary pathways in Australasian psittaculid parrots in terms of ecological traits such as body size, beak shape, and dispersal capacity. Results: We found no evidence for an ‘early-burst’ scenario of lineage or morphological diversification. The bestfitting models indicate that trait evolution in this group is characterized by abrupt phenotypic shifts (evolutionary jumps), with no sign of multiple phenotypic optima correlating with different trophic strategies. Thus, our results point to the existence of weak directional selection and suggest that lineages may be evolving randomly or slowly toward adaptive peaks they have not yet reached. Conclusions: This study adds to a growing body of evidence indicating that the relationship between avian morphology and feeding ecology may be more complex than usually assumed and highlights the importance of adding more flexible models to the macroevolutionary toolbox.info:eu-repo/semantics/publishedVersio